Just to let you know for 90 day reporting in Jomtien you do not physically have to go into the immigration building. You just go to the desk outside on your right as you enter through the gate. Drop your passport and forms etc off and go back an hour or 2 later. No waiting around.
If you leave before your first 90 day report then you count
*****
days from when you return.
However You do either need a re-entry permit (which I think you have for the 1000baht) or multi entry re-entry permit for your 1 year extension still to be valid when you return to Thailand