I really don't think it should be any problem at all. If it was 91st day then yes but 90th day . I am leaving this weekend after 92 days. I reported last Friday when I received my one year extension.
I was in same situation. They told me I could not marry my Thai wife in Thailand. I did not have My Marriage certificate or her divorce certificate translated in the U S. Too much red tape so I just got the Retirement visa