if its Japanese passport then yeah as the place of issue Japan, i have USA got in Canada since i am dual but i always use USA as place of issue for USA passport
Once you get the DTV you will NOT have any issue to enter Thailand. you can even apply tourist Visa from embassy and go to Thailand without any issue (i have done it before i got the DTV), they only banned you for using visa exemption too many time in one year (dont argue with me about there is no mentioned the limit anywhere, i am just telling you what i have been told by the Thai IMMIG), i am sure if you wait another 6-8 months outside Thailand then you can even come with visa exemption....
i myself also thinking to get Indonesia’s digital nomad visa, always have a backup plan and no harm to have another visa if you can......good idea in my opinion