With your history you took a big risk flying into BKK without fast track. That system-level note sounds cursed. Most immigration offices are now likely to deny future tourist extensions, so you'd be doing a border run (or fast track flight) every 60 days. Get a DTV.
My friend with experience in this situation said your son is a special VIP visitor who should book airport fast track service through a reputable visa agent. Cost: 2500-4000 THB.
Faster and cheaper than 'get a proper visa from Malaysia', or doing a land border entry. He also said that whoever bothers with a sob story with a 'return flight', 'proof of accommodation' and '20k THB in cash' is simply not appreciating the game.